Fortuna Dusseldorf won 3-2 at Nurnberg to win Germany's second division on Sunday, while Eintracht Braunschweig were relegated to the third tier.
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Mario Gomez was upset by Eintracht Braunschweig supporters singling him out in the relegation-promotion playoffs.
Wolfsburg clinched Bundesliga survival by beating Eintracht Braunschweig 1-0, giving the side an aggregate win in their relegation-promotion playoff.
Daniel Ginczek set up three goals and scored the fourth for Stuttgart as the 2007 Bundesliga champions finished with 69 points.
Eintracht Frankfurt defended their place in the Bundesliga next season with a 1-0 win over Nurnberg for a 2-1 aggregate win the relegation playoff.
Holders Bayern Munich cruised into the quarterfinals of the DFB-Pokal by beating second-division Eintracht Braunschweig 2-0 on Wednesday.